BASIC PRINCIPLES OF PLANT PATHOLOGY AND PLANT DISEASE MANAGEMENT

Plant Pathology  or  phytopathology  is  a  branch  of  agricultural,  botanical  or biological  science  which  deals  with cause,  etiology,  losses  and  control  of plant diseases.  Disease  is  a  malfunctioning  process  caused  by  continuous  irritation.  A plant  is  said  to  be  diseased  when  one  or  more  of  its  functions  are  interfered  by pathogen.  The  pathogen  is  any  agent  that  causes  pathos  (ailment / suffering)  or damage.  It  include  all  living  organisms  associated  with  causation  of  diseases, viruses  as  well  as  abiotic  agents  such  as  adverse  atmospheric  or  soil conditions. However,  the  term  is  generally  used  to  denote  living  organisms  (fungi, bacteria, mycoplasma  like  organisms,  nematodes  etc.)  and  viruses  but  not  abiotic causes. Pathogenicity is the ability of a pathogen to cause disease and pathogenesis is the chain of events that leads to the development of disease in plants.

Recognition between host and pathogen
 
It is not much clear how pathogens recognize their hosts and vice-versa. It is
assumed  that  when  a  pathogen  comes  in  contact  with  a  host  cell,  an  early  event takes place that triggers a fairly rapid response in each organism that either allows or impedes further growth of the pathogen and development of disease. These may include  specific  host  signal  compounds  or  structures,  or  specific  pathogen  elicitor molecules,  and  either  of  them  may  induce  specific  actions  or  formation  of  specific
products by  the  other organism  which  decides  whether reaction  will  be  compatible or incompatible. 

Concept of Infection

 
After  landing  on  the  host  or  having  come  in  contact  with  the  living  host surface through dissemination by seed, soil or air, the pathogen generally initiate the process  of  infection.  The  success  of  this  process  depends  on  many  factors.  The host  should  be  susceptible,  the virulent pathogen, and  have  favourable environmental conditions for pathogen. Most  fungal pathogens  first grow  on  host  surface  before  penetration  to achieve  proper  numerical  and  chemical  strength.  In  other  fungi, spores  germinate and either by the germ tube by itself cause penetration directly or indirectly or it first
produces an appressorium from which infection thread develops and penetrate the host.  Indirect  penetration  takes  place  through  wounds  and  natural  openings.  In direct penetration into the host the pathogen exerts its own efforts to break the host barriers and directly enters through the cuticle or epidermis without seeking the help of wounds and natural openings. Direct penetration by pathogens is through use of mechanical force  (fungi and  nematodes) or by  chemical  action  or both.  Pathogens are known to produce enzymes to degrade cuticle, epidermis and cell walls to reach to  protoplasm.  These  substances  of  fungus  or  bacterium  help  in  tissue disintegration,  modification  of protoplasm  for  use  and  other  biochemical  activities associated  with  pathogenesis.The  viruses  are  passive  in  transmission  and  they reach the interior of host cells only with activity of organs of their vector or by some other  mechanical  means.  Bacteria  enter  into  host  cells  through  wounds  or  natural openings.


Infection
 
Infection  is  said  to  occur  when  hyphae  developing  from  infection  tube  or
bacterial  cells  that  have  entered  are  able  to  establish  biological  relationship  with host  cells,  absorb  nutrients  and  with  further  development,  cause  tissue disintegration, produce toxins and other harmful substances.
 In  viral  infection  the  virus  comes  in  contact  with  host  protoplasm.  Their
nucleic  acid  induces  the  host  nucleic  acid  to  form  more  virus  nucleic  acid.  This malfunction of the host nucleus results in pathogenesis. Bacteria and fungi dissolve cell  walls  by  their  enzymes  after entry  into  host  and  absorb  nutrients  or fungi may produce  special  organs  (haustoria)  which  penetrate  the  cell  walls  and  lie  in  the protoplasm,  absorption  of  nutrients  taking  place  through  osmosis.  Chemical interactions  occurring  during  these  processes  lead  to  disease  development.  The pathogens colonize host tissues and then exit from host to spread to new hosts.

Symptomatology
 
The pathogens induce reactions in the body of their host. As a result of these
reactions  certain  abnormalities  appear on  the  plant.  In  addition  the  pathogen  itself may  become  visible  on  the  host  surface  giving  it  abnormal  appearance.  The abnormalities, sign or evidence of disorder, are known as symptoms of the disease.


A. Signs 
  1. Downy  mildew:- Sporangiophore  and  sporangia  of  the  fungus  appear as downy  growth  on  the  lower  surface  of  leaves.  They  appear  as  white,  grey, brownish or purplish growth on the host surface e.g., Downy mildew of Pearl millet. 
  2. Powdery mildew: - Appearance of white to dirty white powdery mass on plant surface  comprising conidiophores,  conidia  or  mycelium  of  the  fungus  e.g., Powdery mildew of Pea. 
  3. Rust: - A disease giving a rusty appearance to a plant and caused by one of the members of uredinales. It relatively appears as small pustules of spores usually breaking through the host epidermis. The pustules may be red, black or yellow e.g., Rusts of Wheat. 
  4. Smut: - A  sooty  or  black  or  charcoal  like  powdery  mass  produced  by members  of  ustilaginales  which  can  be  seen  on  affected  plant  parts  and usually symptoms appear on floral parts e.g., Loose smut of Wheat. 
  5. White  blister: - Numerous  white  blisters  like  pustules  which  break  open  the host epidermis and expose powdery mass of spores. They are similar to the rust.e.g. White rust or blister of Rapeseed- Mustard. 
  6. Bunt: - A disease in which the grain contents are replaced by odorous smut spores. Normally belonging to fungi of family Tilletiaceae e.g., Bunt of wheat.
  7. Mould: - A  sooty  or  black  coating  on  foliage  or  on  fruits  formed  by  dark hyphae of fungi. Sometimes it is caused by green hyphae of fungi-as green coating, and then it is known as green mould e.g., Green mould of Citrus.
  8. Blotch: - It refers to the superficial discolouration of the leaves or fruits along with necrosis e. g., Purple blotch of Onion.
  9. Scab: - It  refers  to  ulcer  like  lesions  on  fruits  or  roughened  or  crust  like symptoms on  tubers and  leaves  etc.  It  is due  to over growth  of  cortical and epidermal cells e.g., Apple scab.
    10. Exudation: - In  certain  diseases  a  fluid  is  exuded  from  the  infected  tissues and phenomenon is known as exudation. A continuous flow of liquid from the
        lesion  is  known  as  bleeding  (usually  do  not  contain  pathogen  cell).  When exudates mixed with pathogen as in case of bacterial diseases, it is called as ooze.  If  the  gummy  ooze  from  the  lesions  dries  up  into  a  hard  /  semi  hard gummy masses it is called as gummosis. 
    11. Sclerotia: - Sclerotia  are  a  compact  mass  of  dormant  fungal  mycelium. Sclerotia are most often black or they may be buff or dark brown in colour.
    12. Ergot: - Appearance of creamy droplets of a sticky liquid exuding from young florets  of  infected  heads  which  are  soon  replaced  by  hard  sclerotia  of  the fungus e.g., Ergot of Pearl millet. 

B. Symptoms due to some effect or change in the host plant 

1. Discolouration:
a. Etiolation: Yellowing due to lack of light or prolonged exposure to darkness  b. Chlorosis:  Appearance  of  yellow  colour  in  place  of  green  colour  due  to  low temperature, iron deficiency, excess of lime or infection by viruses, fungi and bacteria.
c. Chromosis:  Change  of  green  colour  to  red,  purple  or  orange  is  called chromosis.
d. Mosaic: Uneven development of chlorophyll producing light green patches with dark green areas.
e. Albinism:  Change of green colour to white 

  2.Over growth or Hypertrophy:
  
a.  Gall:  Abnormal  development  of  infected plant  parts  may  be  due  to hypertrophy  or  hyperplasia.  It  may  be  more  or  less  globosely,  elongated  or irregular. e.g. Crown gall, Club root of Crucifers.
b.  Witches  broom:  Numerous  slender  branches  arise  from  a  limited  region  in close clusters just like a broom. e.g. Witches broom of Potato.
c. Rugosity: Veins become sunken and inter veinal portion is elevated.
d. Rossetting: Crowded condition of foliage due to lack of internodal elongation.
e. Curling:  It  refers  to  the  abnormal  bending  or  rolling  or  folding  of plant organs particularly in leaf due to localized out growth of host tissues.
f. Epinasty:  Downward  curvature  of  leaf  due  to  more  growth  at  some portion.
g. Enation:  Overgrowth  or tumor  like  structure  appears on  surface  of  leaf along with veins.
h. Phyllody: Floral parts develop into leaf like structures.

  3. Atrophy or Dwarfing or Stunting:
It is abnormal development of most of the plant parts causing reduction in plant height, leaf size and other organs.
 
  4. Necrotic symptoms
a.  Blight: Rapid  killing  or  sudden  death  of  plant  or  plant  parts.  It  gives  burnt appearance.
b. Blotch: Appearance of large, irregular lesions on leaves, shoots and stems.
c. Canker: Necrotic  lesions  often  sunken  in  the  cortical  tissues  of  stem,       leaves or twigs.
d. Anthracnose: Appearance  of black  sunken  lesions  on  leaf,  stem  and  fruit and pathogen produce fruiting bodies i.e. acervuli on infected tissues.
e. Die  back: Dying  of  plant  organs  especially  the  branches  from  top  to downwards.
f. Damping off: Death of the seedlings near the soil level as a result of which the seedling topples down on the ground.
g. Scald: Death of plant organs due to effect of high temperature.
h. Rot: The affected tissue die, decompose and turn brown. It takes place due to the production of cell wall degrading enzymes by the pathogen.
i. Lesion: It refers to the distinct and localized spot on the host tissues.
j. Spots: Usually defined as circular or oval shape with central necrotic areas surrounded by variously coloured zones. Some times they are restricted by veins.
k. Shot  hole: Circular  hole  in  leaves  resulting  from  the  drooping  out  or detaching of the central necrotic areas.
l. Streak  or  stripe: development  of  minute  linear  lesions  known  as  streak. Enlargement  of  streaks  into  variable  length  and  breadth  are  known  as stripes.
m. Wilt: The leaves and other succulent parts loose their turgidity and droop.
n. Hydrosis: A  water  soaked  translucent  conditions  of  the  tissue  due  to  cell sap passing into intercellular spaces.
o. Scorch: Browning of leaf margins resulting from death of the tissues 


Survival of plant pathogens :
In  absence  of  cultivated  host,  animate  pathogens  must  find  some  alternate
source of their survival otherwise infection chain will remain incomplete. The same holds  true  for  viral  diseases.  The  pathogens  of perennial  cultivated  plants  do  not face problem of survival because the host is available for several years. Pathogens may  survive  on  cultivated  host,  alternate  hosts  and  collateral  hosts.  In absence  of cultivated  host,  the  facultative  parasites  are  capable  of surviving  as  saprophytes. Soil  and  plant  debris  serve  as  media  for  this  saprophytic survival.  Antagonism  by other soil microflora reduces their ability to continue saprophytic activity unless they have  strong  competitive  saprophytic  ability.  Fungi  can  survive  through resting  or dormant  structures.  The  dormant structures  of  survival  of  fungi  may  be  conidia, chlamydospores, oospores, perithecia, cleistothecia, sclerotia etc. When facultative saprophytes  are  unable  to  continue  as  saprophytes  in  plant  debris  or  in  soil  they produce dormant spores.

Dispersal of plant pathogens
 
Dispersal  of  infectious  plant  pathogens  can  be  grouped  in  two.  The  direct
(active or autonomous dispersal) and indirect (passive dispersal). The knowledge of these  methods  of  dispersal  is  essential for  effective  control  of  plant  diseases because  possibilities  of  preventing  dispersal  and  there  by  breaking  the  infection chain  exist.  Autonomous  dispersal  of  bacteria,  fungi,  and  viruses  is  accomplished through  the  agency  of  soil,  seed  and  plant  organs  during  normal  agronomic operations. There is no major role of external agencies like animals, wind and water etc in  this  type  of  dispersal.  Passive  dispersal  of  plant  pathogens  is  accomplished through  the  agency  of  members  of  animal  kingdom  such  as  man,  insects,
nematodes, animals, birds etc. air and water.

Effect of environment on disease development
 
The  disease  results  from  the  interaction  of  a  pathogen  with  its  host  but  the intensity  and  extent  of  this  interaction  is  markedly  affected  by  the  environmental factors. Although these factors are not the causal agents of infectious diseases yet they are the final determinants of almost all the events that constitute the infection chain. The role of environments in pathogenesis is as important as susceptibility of host  and  pathogenecity  of  the  causal  agent.  The  first  step  in  infection  chain  is survival  of  pathogen.  Adverse environment  (physical,  chemical,  biotic)  can  limit survival  ability  and  reduce  the  density  and  capacity  of  inoculum.  The  transport  or dispersal  of inoculum  is  also  dependent  on  environment  in  speed  and  distance.
Germinability  of  spores,  and  the  number  and  flight  range  of  insect  vectors  are directly  influenced  by  prevailing  weather.  At  the  time  of  penetration,  the  structural defense barriers of the host, stability and germination of spores on the host surface and their penetration are influenced by meteorological conditions. The factors such as light, temperature and humidity on host surface also definitely determine the exit of  pathogen,  its  sporulation  and  amount  of  secondary  inoculum  produced  for dispersal. Thus, it is obvious that inspite of the pathogen is being virulent and host being susceptible,  disease  may  not  develop  in  a  population  unless  environmental conditions are favourable for it.

Principles of disease management 
The methods of disease control have been classified in to six groups.

A.  Avoidance  of  pathogen: Avoiding  disease  by  planting  at  times  when,  or  in areas  where,  inoculum  is  ineffective  due  to  environmental  conditions,  or  is  rare  or absent.  Many  diseases  can  be  managed  by  proper  selection  of  field,  choice  of sowing  time,  selection  of  cultivars,  seed  and  planting  stocks,  and  modification cultural practices. The aim of these measures is to enable the host to avoid contact with  the  pathogen  or  the  susceptible  stage  of  the  plant  and  favourable  conditions should  not  coincide.  The  main  principles  under  this  group  are  selection  of geographical  area,  selection  of  field,  choice  of  sowing  time,  selection  of  planting
materials, disease escaping varieties and modification of cultural practices etc.

B. Exclusion of inoculum: Preventing the inoculum from entering or establishing in the field or area where it does not exist. Seed certification, crop inspection, growing crops in regions unfavourable for pathogens and quarantine measures are some of the means of preventing the spread of the pathogen.

C.  Eradication  of  pathogen: Reducing,  inactivating,  eliminating  or  destroying
inoculum  at  source,  either  from  a  region  or  from  an  individual  plant  in which  it  is already  established.  This  is  attempted  through  the  methods  such  as  biological control, crop rotation and sanitation etc. 

D. Protection: The inoculum of many fast spreading infectious diseases is brought by  wind  from  neihbouring  fields  or  any  other  distant  place  of  survival.  Protective measures  are  necessary  to  destroy  or  inactivate  such  inoculum.  It  is  possible  by creating  a  chemical  toxic  barrier  between  the  plant  surface  and  the  invading pathogen.  Methods  employed  to  achieve  such  results  are chemical  sprays,  dusts, modification of environment and host nutrition etc.

E.  Disease  resistance: Preventing  infection  or  reducing  the  effect  of  infection  by managing the host through improvement of resistance in it by genetic manipulation or  by  chemotherapy.  In  any  crop,  resistance  against  a  specific  disease  can  be developed  by  selection  or  hybridization.  This  type  of  resistance  is  genetic. Biochemical  resistance  of  non-genetic  nature  can  be  developed  in  plants  by chemotherapy  or  modification  of  nutrition.  This  type  of  resistance  is  induced  and temporary, lasting until the chemical or nutrient is effective in the plant.

F.  Therapy: Reducing  severity  of  a  disease  in  an  infected  individual  through curative procedures such as management of physical environment including cultural control,  management  of  associated  microbiota  which  includes  antagonism, management with chemicals and management with therapy, radiation and meristem culture. 
Basis of Disease Management Principles

  • Management of the disease triangle
          – Disease - Interaction of host, pathogen and environment
          – None of them alone can operate to cause a disease
          – This constitute the disease triangle
          – Principles of management should tackle all the three
  • Management of pathogen-reduction, eradication and prevention of inoculum through quarantine.
  • Management  of  host- Practices  directed  to  improve  plant  vigour,  induced resistance  through  nutrition,  induction  of  genetic  resistance  and  providing protection through chemical and biological means
  • Management of environment-involves water, soil and crop management

A. Avoidance of the Pathogen


  • Choice of geographical area
          – Ergot  of bajra (More severe in wet areas)
          – Bean anthracnose and bacterial blight (more severe in wet areas).  
          – Potato  seed  tuber  production  (in  cooler  regions  at  higher  altitude  for virus free tubers)
          – Karnal bunt of wheat (more severe in wet areas).
  • Selection of the field
          – Many  soil  borne  diseases  can  be  avoided  by  proper  selection  of  the field  (This  can  be  ascertained  on  the  basis  of  previous  history  of  field and nature of the pathogen)
                  • Root-rots, wilts, stem rots, red rot
  •  Choice of sowing time
Many  diseases  are  severe  when  susceptible  stage  of  plant  coincide with pathogen under favourable conditions
                  • By altering sowing time avoid the 
Sowing  of  gram  in  November  suffers  less  than October sown crop.  Early sown crop of mustard suffers less from white  compared to late sown crop.
  • Disease escaping varieties
 – Certain  varieties  escape  damage  by  disease  because  of  their growth factors.
                  • Early  maturing  varieties  of  pea  (Matures  in  January)  usually escape damage from powdery mildew and rust.
  • Selection of seed and planting stock
Many  diseases  are  introduced  by  these  and  can  be  easily controlled by proper selection of the planting material
                  • Various smuts, red rot of sugarcane, black scurf of potato
  • Modification of cultural practices
Plant  to  plant  distance,  time  and  amount  of  irrigation,  quantity  and quality of fertilizer, time and method of planting, mixed cropping, of sowing. 
                  • Necessary  modifications  in  these  practices  can  help  in
                      managing the disease.

B. Exclusion of Inoculum
 Objective  of  exclusion  is  to  prevent  spread  of  the  disease  when  avoidance has failed or is not feasible
  • Seed  treatment: Any  planting  material  can  be  given  heat,  gas  or  chemical treatment to exclude the pathogen present in or on them.
  • Inspection  and  certification: Crops  grown  exclusively  for  seed-Periodical inspection for presence of diseases and removal of diseased plants. By this Inter and Intra-regional spread of seed borne diseases can be prevented.
  • Exclusion of insect vectors: Many diseases spread through insects which transfer the inoculum from one region to another region depending upon their flight range-Therefore exclusion of insect vectors is essential.
  • Exclusion through plant quarantine - To prevent the import and spread of plant  pathogens  into  areas  from  which  they  are  absent,  national  and  state   laws  regulate  the  conditions  under  which  certain  crops  susceptible  to  such pathogens may be grown and distributed between states and countries.
Directorate  of  Plant  Protection,  Quarantine  and  Storage  (DPPQ&S,  Ministry of  Agriculture)  work  through  its  national  Network  of  Plant  Quarantine  and Fumigation Stations

C. Eradication of the pathogen
  • Pathogen  can  enter  an  area  or  crop  in  spite  of  avoidance  and  exclusion  or inoculum  may  already  present  in the  field. So  eradication  of  pathogen inoculum can be attempted through biological, cultural, physical or chemical methods.
  • Biological control of plant pathogens
          – Aims at eradication and control of pathogens through activity of other
                microorganisms.  Such procedure enhance activity of m.o. in soil or at
              infection site and effect may be biocidal or biostatic
              • Introduction of bioagents (fungal and bacterial antagonists)
              • Soil  amendments  with  organic  matters  (enhances  microbial
                  activity)
  • Crop rotation 
          – By continuous growing the same crop in the same field for many years
              enhance soil borne pathogens
                  • Soil  borne  diseases  particularly  those  pathogens  which  can
                      survive  in  the  soil for  a  limited  period, crop  rotation  helps  in
                      eradicating the inoculum of such pathogens
                        • Red rot of sugarcane (one year crop rotation)
                        • Wilt, root rot (three years crop rotation)
  • Removal and destruction of diseased plants or plant organs
          – Eradication of alternate or collateral host Field  sanitation  (destruction  of  diseased  crop  debris,  burying  the
              debris deep in soil) for facultative parasite and saprophytes
                  • Powdery mildew of wheat, barley and peas
                  • Downy mildew of bajra, mustard, maize, red rot of sugarcane

  • Heat and chemical treatment of diseased plants
          – It  is  employed  to  destroy  resting  structure  or  exposed  growth  of  the
              pathogen on the host
                  • Wheat seed treatment with Vitavax for loose smut control
                  • Moist  hot  air  treatment  at  54ÂșC  for 2  h for  the  control  of  GSD
                      and RSD in sugarcane.
  • Soil treatment
          – Aim is to inactivate or eradicate the pathogen present in the soil
                  • Chemical  treatment  for  nurseries  and  small  fields  using
                      fungicides  namely  Captan,  Bavistin,  Kitazine  granules  etc.
                      (Pythium, Rhizoctonia and Sclerotium)
                  • Soil fumigation by formaldehyde, chloropicrin or vapam for soil
                      borne pathogen
                  • Steam is also used in some countries in polyhouses
                  • Flooding of the field to create anaerobic condition or low oxygen
                      condition (Pathogen like Fusarium can be controlled)
                  • Soil solarization in summer months (manages many soil borne
                      pathogens)

D. Protective Measures

        Protective  measures  are  necessary  to  destroy  or  inactivate  the  inoculum
        which can not be prevented by other methods
          – Chemical  treatment:  Aim  of  most  chemical  sprays  is  to form  a
              protective  layer  on  host  surface  to  prevent  or  to  kill  the  pathogen
              growth (Protectants)
          – Some of chemicals, eradicate the already established pathogens from
              the host (Eradicants)
  • Chemical control of insect vector
          – Control of insect vectors by  insecticides  will help in minimising the viral and
              other diseases
  • Modification of the environment 
          – Improved  aeration  reduces  humidity  (Recommended  for  control  of
              white rust in Rapeseed & mustard, Downy mildew of grapes)
          – Mixed cultivation of cotton and moth reduces the incidence of root rot
              (Less  disease  due  to  low  temperature  and  high moisture  by lush
              growth of moth)
          – Post harvest rot of fruits and vegetables (storing in cool and dry rooms
              reduce rot by fungi and bacteria)
  • Modification of host nutrition 
          – Many leaf diseases are favoured by high nitrogen doses (Wheat rust,
              Alternaria blight of mustard, red rot of sugarcane)
          – Potassium application usually decrease  disease  (Rice  blast,
                Helminthosporium blight  in various crops
          – High  calcium increases  resistance  to  wilt (strengthening  of  pectic
              substances in cell wall thereby interfere in activity of pectic enzymes of
              the pathogen) 
 

E. Development of Resistance in Plants
    • Through selection or hybridization (Vertical & Horizontal resistance)
    • Through  induced/systemic  acquired  resistance  by  chemicals  or  biological means  (Plant  defense  activators – salicylic  acid  is  a  common  derivative  of acetyl  salicylic  acid  (Aspirin),  dichloroisonicotinic  acid.    They  induce resistance in several host-pathogen combinations.

F. Therapy of Diseased Plants
  • Reducing severity of the disease in an infected individual
          – Chemotherapy 
          – Heat therapy
          – Tree surgery

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